Population structure in Quercus suber L. revealed by nuclear microsatellite markers

PeerJ. 2022 Jun 16:10:e13565. doi: 10.7717/peerj.13565. eCollection 2022.

Abstract

Quercus suber L. is a sclerophyllous tree species native to the western Mediterranean, a region that is considered highly vulnerable to increased temperatures and severe dry conditions due to environmental changes. Understanding the population structure and demographics of Q. suber is essential in order to anticipate whether populations at greater risk and the species as a whole have the genetic background and reproductive dynamics to enable rapid adaptation. The genetic diversity of Q. suber has been subject to different studies using both chloroplast and nuclear data, but population structure patterns remain unclear. Here, we perform genetic analyses on Q. suber using 13 nuclear microsatellite markers, and analysed 17 distinct locations across the entire range of the species. Structure analyses revealed that Q. suber may contain three major genetic clusters that likely result from isolation in refugia combined with posterior admixture and putative introgression from other Quercus species. Our results show a more complex structure scenario than previously inferred for Q. suber using nuclear markers and suggest that different southern populations contain high levels of genetic variation that may contribute to the resilience of Q. suber in a context of environmental change and adaptive pressure.

Keywords: Conservation; Cork oak; Glacial refugia; Population genetics; West Mediterranean.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Nucleus / genetics
  • Microsatellite Repeats / genetics
  • Quercus* / genetics
  • Trees / genetics

Grants and funding

This work was supported by project ‘Keep Pace: Selection of trees keeping pace with fast environmental changes, a science-­based approach for sustainable XXI century Oak forests’, co-­funded by the EU ERDF funds, within the Portugal 2020 Partnership Agreement and Programa Operacional Regional Algarve, and by national funds through Fundação para a Ciência e Tecnologia (FCT) Portugal (ALG-­01-­0145-­FEDER-­029263 / PTDC/ASP/SIL/29263/2017). Research was also supported through grants PTDC/AGR-GPL/104966/2008 and SOBREIRO/0036/2009, and through the research units “GREEN-IT, Bioresources for Sustainability” (UIDB/04551/2020) and cE3c (UIDB/00329/2020). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.